Scholarly articles

Curated technical explainers, research notes, and scholarly essays. Articles listed here are published in the site’s full-text scholarly feed.

  1. Running AlphaFold3 (single seq mode) 3 times faster on TPUs

    Ramith Hettiarachchi · October 24, 2026

  2. Clustering pockets by their interactions, and a gotcha in PLINDER 2024-06/v2 pli_unique_qcov

    Ramith Hettiarachchi · October 4, 2026

  3. An inspiring open science journey to remember 💙

    Ramith Hettiarachchi · February 12, 2024

  4. Differentiable Search of Evolutionary Trees from Leaves — ICML 2023 Workshop Paper

    Ramith Hettiarachchi · June 24, 2023

  5. ESM-2 (evolutionary-scale prediction of atomic level protein structure with a language model)

    Ramith Hettiarachchi · February 10, 2023

  6. Deep Residual Learning for Image Recognition

    Ramith Hettiarachchi · January 26, 2022

  7. ImageNet classification with deep convolutional neural networks (AlexNet)

    Ramith Hettiarachchi · January 19, 2022

  8. JAX 001 - A closer look at its background

    Ramith Hettiarachchi · January 5, 2022

  9. Getting the installation Right! Raspberry Pi 4 with Ubuntu 20.04 + ROS Noetic + Intel RealSense

    Ramith Hettiarachchi · January 9, 2021